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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS66072.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | WRKY | ||||||||
Protein Properties | Length: 251aa MW: 28147.2 Da PI: 9.1493 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.7 | 1.3e-29 | 101 | 160 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs +d+++v+ tYegeHnh EPS66072.1 101 VKDGYQWRKYGQKQTRDNPCPRAYFKCAFApSCPVKKKVQRSIDDQTIVVATYEGEHNHA 160 58***************************99****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-28 | 96 | 160 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.501 | 96 | 159 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-24 | 98 | 160 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-33 | 101 | 161 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-24 | 102 | 159 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
TALESELKRV KQENRKLTEL LNLVRRNYSD LKSKQSGEHE NHGNNNKKRK TSEGSADHDG 60 SESISSDEDS TRIMPKEEHR IKERISRVFI KTDGSDKSLI VKDGYQWRKY GQKQTRDNPC 120 PRAYFKCAFA PSCPVKKKVQ RSIDDQTIVV ATYEGEHNHA ECHPRSNRNS DVTNPMRHST 180 SASAAAATAA LGLIDNNDKR REEKAREEEG SAVTNVESDA GELHRLLAER MATTLTRDPM 240 FRAAIAAAIG G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-18 | 100 | 159 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006368511.1 | 2e-70 | probable WRKY transcription factor 40 | ||||
TrEMBL | S8E1A4 | 0.0 | S8E1A4_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0001s03620.1 | 6e-70 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 8e-58 | WRKY DNA-binding protein 40 |
Publications ? help Back to Top | |||
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