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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS65994.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | LSD | ||||||||
Protein Properties | Length: 255aa MW: 27649.6 Da PI: 4.1842 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.8 | 1.5e-12 | 203 | 227 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP GAp+V+C++C+ V EPS65994.1 203 CGGCSILLMYPDGAPAVQCSSCQLV 227 ***********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.6E-6 | 162 | 192 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.9E-11 | 200 | 230 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-10 | 203 | 227 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGHEAKEDEE MATSTSFEED EDDGPPPGFY PISTPPPSRE ADVQHHGHEV SDEDEEGPPP 60 GFESIGPKPA SESAEGLDVE DEDDDLDGPP PGWDLKNPFS QTPPGLEIKL RIAAAAAEDD 120 DDDKVIPSET EDVLTTPMRS PSIPTPLREE KHGGTPPPER GQLVCGTCQK LCLYPMGTKW 180 VQCPSCKEVN FVLEASEIGQ VVCGGCSILL MYPDGAPAVQ CSSCQLVTQV GEHNKRPPLS 240 VQQAKLRYHR SKRAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | S8CGD1 | 0.0 | S8CGD1_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H01490.1.p | 3e-39 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11642 | 22 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-33 | lsd one like 2 |
Publications ? help Back to Top | |||
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