PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65958.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family CO-like
Protein Properties Length: 346aa    MW: 39056.9 Da    PI: 5.3234
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65958.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.3e-071051237
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                ++r C+ ++  ++ l+C  ++  lC  C  e H+       H
  EPS65958.1 10 RPRLCDFCSTSKALLYCVADSAKLCLRCDREVHSTnplfkkH 51
                5789*****999*********************655555555 PP
2zf-B_box27.37.3e-095597442
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42
                  C+ +++   ++fC ++++ lC++C  e+H +    H+++p+
  EPS65958.1 55 LLCDGCDSAASSIFCSTDSSVLCQNCDWESHDSfrriHDRRPI 97
                57******99*********************668889999886 PP
3CCT61.52.7e-21303345143
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                 R+ al+RYkeK+ktR+++KkirYesRK++Ae R R+KGrF+k 
  EPS65958.1 303 RDSALTRYKEKKKTRRYDKKIRYESRKTRAEGRMRIKGRFAKV 345
                 899**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.125956IPR000315B-box-type zinc finger
SMARTSM003361.8E-13956IPR000315B-box-type zinc finger
PfamPF006432.3E-61052IPR000315B-box-type zinc finger
CDDcd000211.32E-51256No hitNo description
PROSITE profilePS5011910.7935297IPR000315B-box-type zinc finger
PfamPF006432.3E-55597IPR000315B-box-type zinc finger
CDDcd000214.09E-55697No hitNo description
SMARTSM003360.755797IPR000315B-box-type zinc finger
PROSITE profilePS5101714.842303345IPR010402CCT domain
PfamPF062033.6E-16303345IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
EEEEEEKFRR PRLCDFCSTS KALLYCVADS AKLCLRCDRE VHSTNPLFKK HARSLLCDGC  60
DSAASSIFCS TDSSVLCQNC DWESHDSFRR IHDRRPIEGY AGCPSVSELL NFLGLEDLGK  120
KKKSVSGDEE AFLDFLVWET PSVVSLDDLI VPNDFQELGG HHFQAMGVPP LPKNRNAVCG  180
KHKEDILNQL REMAATEPDF HGFLEDLQPD DDNSLLFHSQ PPPISSYQVT NPNHIPNPKH  240
SLCVCDCVIV MQIAAEKCED GGADDESFQL ADFFDLDHDA GGGESSDAPP QVLLPKLLNT  300
QERDSALTRY KEKKKTRRYD KKIRYESRKT RAEGRMRIKG RFAKVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079734.11e-125zinc finger protein CONSTANS-LIKE 13
TrEMBLS8DS630.0S8DS63_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.D00173.1.p1e-117(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-73B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]