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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS65907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 22203.1 Da PI: 9.4136 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00064 | 117 | 139 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F+++ L H +H EPS65907.1 117 FVCSSCKRVFNSHQALGGHRASH 139 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.7E-8 | 39 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.3E-5 | 40 | 61 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.3E-5 | 112 | 139 | No hit | No description |
Pfam | PF13912 | 1.9E-9 | 117 | 140 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.39 | 117 | 139 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.972 | 117 | 144 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 119 | 139 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.97E-5 | 169 | 195 | No hit | No description |
Pfam | PF13912 | 8.3E-9 | 170 | 194 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.683 | 170 | 197 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.59 | 170 | 192 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
QQTPRRKRRR KTSEFSVEPA GVSRPAARRP DPHAPNITTP CPECYRTFWS WKALFGHMRC 60 HPKRQYRGIN PPENFHRRQG KAPAEEEEFK AEDYEVASYL LMLANGPPMD GPHVGRFVCS 120 SCKRVFNSHQ ALGGHRASHK NVKGCYAITK NDDDDGAAAC CSPSSSTTGH KCVICQRIFT 180 SGQALGGHLR CHWEKAAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 10 | RRKRRRK |
2 | 5 | 9 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597140.1 | 1e-66 | PREDICTED: zinc finger protein ZAT3-like | ||||
Swissprot | O65499 | 1e-63 | ZAT3_ARATH; Zinc finger protein ZAT3 | ||||
TrEMBL | S8E0Y3 | 1e-147 | S8E0Y3_9LAMI; Zinc finger family protein (Fragment) | ||||
STRING | Bo7g117320.1 | 5e-66 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6385 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 5e-52 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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