 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
EPS65497.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
| Family |
C2H2 |
| Protein Properties |
Length: 285aa MW: 32471.8 Da PI: 9.0233 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EPS65497.1 | genome | LSMU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 18.6 | 5.1e-06 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++Cgk F r nL+ H r H
EPS65497.1 48 FICEICGKGFQRDQNLQLHRRGH 70
89*******************88 PP
|
| 2 | zf-C2H2 | 12.7 | 0.00038 | 124 | 146 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k + +s+ k H +t+
EPS65497.1 124 WKCDKCTKIYAVQSDWKAHSKTC 146
58*****************9998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MPENPLQPDE EKTTATTKKK KRNLPGNPDP DAEVVVLSPK TLMTTNRFIC EICGKGFQRD 60
QNLQLHRRGH NLPWKLKQKS SRDRRKKAYV CPEPTCPHHH PSRALGDLTG IKKHYCRKHG 120
EKKWKCDKCT KIYAVQSDWK AHSKTCGTRE YRCDCGTLFS RKDRFMSHRA FCDALAEESA 180
KLYATTSSIL AVHHHHHHHH PHDDFPIPNG FCYGGIPSEQ YLRIPGMSSD EMMASAAAVG 240
PIGGSEVDGF LTRDFLGLAG RIRRSNHYNY EELEEWGGNS NTSFF
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 74 | 86 | KLKQKSSRDRRKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000305}. |
| UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
