PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GRAS

Protein Properties

Length: 805aa MW: 90272.8 Da PI: 5.1106

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65383.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	379.2	5e-116	428	799	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL+ cA+av+s+d + +++L +++e+a+p+gd mqR+a+yf+ +L+arla+ ++++y +l e s sse l+a++++ ++P+ k+s++ N EPS65383.1 428 LRTLLTLCAQAVASEDRRSGNEYLRQIREHATPTGDGMQRVAHYFADGLQARLAGAGTQVYTTLLNMEIS---SSEILKAYHIYLATCPFRKVSNFFSN 523 5789**********************************************************999998...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++Il+ + g++ +Hi+Df+i +G+QWp+Llq L+ R++gpp++R Tgv+ p +g ++++eetg+rLa++A+++g++fef++ va+++e+++le++++ EPS65383.1 524 KTILDVARGADSIHIVDFGIFHGFQWPSLLQHLSLRSGGPPRVRFTGVDLPCPGfrPAQRVEETGQRLAHYARKFGIRFEFHP-VAQKWETIKLEDINI 621 ***********************************************99999***********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +gE+laV++ ++l +llde+v +rd+vL+l+++++P v+vv ++ +n++ Fl+rf eal +ysa+fd l++ +pr++eer+ +Er++lgre++ EPS65383.1 622 VEGEVLAVSCLFRLRYLLDETVVPICPRDAVLSLIRQMNPAVFVVGISNGAYNGPFFLTRFREALFHYSAMFDVLDTIIPRDAEERMHLERVVLGREAM 720 *****************99999********************************************************************* PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 n++ace aer+er et+++W+ rl +aG++ +pl+ +++ +++ +r + + + v+e+ +l++gWk+r L+ +S+Wr EPS65383.1 721 NAIACEAAERIERPETYKQWQVRLLRAGLEMLPLKGEITGSIRNTIRSRYHKDFVVDEDGRWLLQGWKGRVLYGLSSWR 799 **********************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.569	402	779	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-113	428	799	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence Send to blast
MNRDSNNWGA PFCGSELTDE DVGLLDSSHA DVAHGRNSDP PFQSCSDDSP ENLDFSDDVL 60 RYLNNFLLED NEEDKAAANT VSDELSFDRT AISCRDDSLE NPESSDELLS YIDHFLREDG 120 ISYEVKNSAH GKPNIAAQVQ PHRVDGLGDM HCFDDTFNAA KDHLLKNDDD VQEVVSVGKS 180 KTDCPEDLHF NDDVLKYINH ILLEEDGEEK ASILDESTAL QATEMSLYEV IWGQHPASAF 240 HYALPNSDQS SMTPDEIRFC SLPDGHHGTT QSSSYTSSSS NGATTTDSAT DSPLSSFDLH 300 DVSSGSGSHS AMQFNKEAED VILIPDTPQI PNEFIIDDAS RRKKSVHSTL PEGRSSKLPS 360 IATESNVAAE MLDKVLVFRE EKEESAIREA VKRNLQVVYE PPKDPKGRGG RRRGRNKGAR 420 KRDDVVDLRT LLTLCAQAVA SEDRRSGNEY LRQIREHATP TGDGMQRVAH YFADGLQARL 480 AGAGTQVYTT LLNMEISSSE ILKAYHIYLA TCPFRKVSNF FSNKTILDVA RGADSIHIVD 540 FGIFHGFQWP SLLQHLSLRS GGPPRVRFTG VDLPCPGFRP AQRVEETGQR LAHYARKFGI 600 RFEFHPVAQK WETIKLEDIN IVEGEVLAVS CLFRLRYLLD ETVVPICPRD AVLSLIRQMN 660 PAVFVVGISN GAYNGPFFLT RFREALFHYS AMFDVLDTII PRDAEERMHL ERVVLGREAM 720 NAIACEAAER IERPETYKQW QVRLLRAGLE MLPLKGEITG SIRNTIRSRY HKDFVVDEDG 780 RWLLQGWKGR VLYGLSSWRP ARHFS

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence Send to blast

MNRDSNNWGA PFCGSELTDE DVGLLDSSHA DVAHGRNSDP PFQSCSDDSP ENLDFSDDVL  60
RYLNNFLLED NEEDKAAANT VSDELSFDRT AISCRDDSLE NPESSDELLS YIDHFLREDG  120
ISYEVKNSAH GKPNIAAQVQ PHRVDGLGDM HCFDDTFNAA KDHLLKNDDD VQEVVSVGKS  180
KTDCPEDLHF NDDVLKYINH ILLEEDGEEK ASILDESTAL QATEMSLYEV IWGQHPASAF  240
HYALPNSDQS SMTPDEIRFC SLPDGHHGTT QSSSYTSSSS NGATTTDSAT DSPLSSFDLH  300
DVSSGSGSHS AMQFNKEAED VILIPDTPQI PNEFIIDDAS RRKKSVHSTL PEGRSSKLPS  360
IATESNVAAE MLDKVLVFRE EKEESAIREA VKRNLQVVYE PPKDPKGRGG RRRGRNKGAR  420
KRDDVVDLRT LLTLCAQAVA SEDRRSGNEY LRQIREHATP TGDGMQRVAH YFADGLQARL  480
AGAGTQVYTT LLNMEISSSE ILKAYHIYLA TCPFRKVSNF FSNKTILDVA RGADSIHIVD  540
FGIFHGFQWP SLLQHLSLRS GGPPRVRFTG VDLPCPGFRP AQRVEETGQR LAHYARKFGI  600
RFEFHPVAQK WETIKLEDIN IVEGEVLAVS CLFRLRYLLD ETVVPICPRD AVLSLIRQMN  660
PAVFVVGISN GAYNGPFFLT RFREALFHYS AMFDVLDTII PRDAEERMHL ERVVLGREAM  720
NAIACEAAER IERPETYKQW QVRLLRAGLE MLPLKGEITG SIRNTIRSRY HKDFVVDEDG  780
RWLLQGWKGR VLYGLSSWRP ARHFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-50	428	799	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085020.1	0.0	scarecrow-like protein 14
Refseq	XP_011085021.1	0.0	scarecrow-like protein 14
Refseq	XP_011085022.1	0.0	scarecrow-like protein 14
Refseq	XP_011085023.1	0.0	scarecrow-like protein 14
Refseq	XP_011085025.1	0.0	scarecrow-like protein 14
TrEMBL	S8DQR7	0.0	S8DQR7_9LAMI; Uncharacterized protein
STRING	Migut.F00778.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-143	GRAS family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]