PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EPS65370.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

TCP

Protein Properties

Length: 245aa MW: 27210.9 Da PI: 8.3773

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65370.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92.7	7.6e-29	51	123	3	75
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasecea 75 g kdrhsk++T +g+RdRRvRls+++a +++dLq++L + ++sk ++WLl +ak+ i el+ ++++++ +++ EPS65370.1 51 GSKDRHSKVCTVKGLRDRRVRLSIPTAVQIYDLQERLNLSQPSKVVDWLLDAAKKDINELPPLQQIPNFTTSS 123 78*************************************************************8888844422 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.2E-27	52	125	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.836	52	110	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MIPAREEEIK VKAPPSSSQK QKSSTTTTTI TSWSRSRIKD PRIVRVSKAL GSKDRHSKVC 60 TVKGLRDRRV RLSIPTAVQI YDLQERLNLS QPSKVVDWLL DAAKKDINEL PPLQQIPNFT 120 TSSIEAMLGS GKLRNEAVLE KWPHVFCGNP VSDQVEMSGI CNPYNPFLKW DSSNSCHHKG 180 HPSQNLGSSL EDYWHGFGVV QLQPSLGYHP PCLAQQVFGF DDAAAAAMPI LFMGEEKCGG 240 GEERD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-16	57	111	1	55	Putative transcription factor PCF6
5zkt_B	4e-16	57	111	1	55	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006338357.1	8e-47	PREDICTED: transcription factor TCP17
TrEMBL	S8CEX4	0.0	S8CEX4_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400003453	3e-46	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	7e-40	TCP domain protein 17

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]