PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EPS65346.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C3H

Protein Properties

Length: 155aa MW: 17780 Da PI: 7.9179

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65346.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.3	3e-09	83	104	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C +aHg EPS65346.1 83 SACPDFRK-GACKRGDACEYAHG 104 67****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	3.92E-5	78	108	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.8E-5	79	105	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.253	80	106	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-7	83	104	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.6E-6	83	106	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	22	114	137	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
HYEPALVALQ RFLPSNSDDV VVEEGEDFDV PVDAFSCDNF RMFEFKVKKC ALARSHDWTA 60 CPFAHPGEKA RRRDPRKYHY SGSACPDFRK GACKRGDACE YAHGVFECWL HPARYRTQPC 120 KDGTHCRRRV CFFAHTQEQL RVLPYSSSSS AVSPE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081722.1	5e-95	zinc finger CCCH domain-containing protein 23
Swissprot	O82199	8e-74	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	S8CKY7	1e-111	S8CKY7_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009784195.1	2e-86	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	8e-71	C3H family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]