PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS65185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | NF-YB | ||||||||
Protein Properties | Length: 131aa MW: 14697.7 Da PI: 10.1332 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 37.5 | 5.8e-12 | 9 | 105 | 5 | 96 |
NF-YB 5 drflPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + lP + v r++k+ l + ++ is +d+ e + fi ++++ a d c+ +r+ in++d++ al ++ f +++ pl++ l+ +r ++ EPS65185.1 9 TEALPKTVVRRLVKEKLSQlsrDSEISvlRDSLLAFSESARVFIHYLSATAHDICKDSRRQIINAEDVFKALEDIDFPEFIGPLRTALEDFRRKNTS 105 5679999999999998765111455553368888899*******************************************************87765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.1E-27 | 8 | 123 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.38E-22 | 11 | 116 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.4E-7 | 12 | 80 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
DSEKSVAETE ALPKTVVRRL VKEKLSQLSR DSEISVLRDS LLAFSESARV FIHYLSATAH 60 DICKDSRRQI INAEDVFKAL EDIDFPEFIG PLRTALEDFR RKNTSKKKGA TASSSKAKES 120 ASKRRKVSPS E |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 125 | KKKGATASSSKAKESASKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088898.1 | 4e-55 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | S8CEA6 | 1e-86 | S8CEA6_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.D02442.1.p | 1e-53 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 8e-38 | nuclear factor Y, subunit B11 |
Publications ? help Back to Top | |||
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