PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65108.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 726aa    MW: 80903 Da    PI: 6.7602
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65108.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08138162526
                 --SGGGGTS...--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                 lC+  a+tG    C+yG++C+F+H+
  EPS65108.1 138 LCPEVAKTGdfsSCPYGENCRFSHD 162
                 8***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.014133164IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4133163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4137163IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5138162IPR000571Zinc finger, CCCH-type
SMARTSM0035699174199IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.601177202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.709.0E-73370613IPR013785Aldolase-type TIM barrel
CDDcd028019.34E-93374609No hitNo description
SuperFamilySSF513953.11E-63374687No hitNo description
PfamPF012072.1E-51377626IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360458476IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002943Biological ProcesstRNA dihydrouridine synthesis
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MTSVNNRKAT QVFSSDRESE YWSVLRTKSL PLEFQPCIGI SEFPLAQSCR IGAMASVAVA  60
EAHPSPEELV AKARAPVKIQ FLCPPPPRNS DEKLAAKGDG TVLAGDDVTG STSILTEKKS  120
KRQLKRERRQ ELKSSSHLCP EVAKTGDFSS CPYGENCRFS HDVDAFNAQK PQDLDGVCPF  180
LNEERPCPYG LSCRFSGTHK VTDTGIASED ASKAKRDIEM NLLRKNVQKL LWKNKMKFPK  240
AHASLKFLAQ EKKKINDDDD DDDNGGVLMA RVPGDIVQDG RSVGSDAAMD EMDCVAQIDK  300
IDGSDISDEQ GLSKKTKCSN DESCLLPSSD EQDSHKKIVY ESHEKSITDC SVDENDKSLK  360
LHPREKKLID FRGKLYLAPL TTVGNLPFRR VCKALGADVT CGEMAMCTNL LQGQASEWAL  420
LRRHSSEDLF GVQICGAYPD TVTKTVELIE QQCMVDFIDI NMGCPIDVVV NKGAGSALLT  480
KPMRMKSVVE ASCRAVDTPL TIKVRTGYFE GKNRIDSLIS DIGNWGACSI TIHGRTRQQR  540
YSKLADWDYI YQCARGAPKT LQVLGNGDVF SYVDWNNHMS SCPELASCMI ARGALIKPWI  600
FTEIKEQRHW DISSGERLDM LKDYARFGLQ HWGSDSKGVE TTRHFLLEWL SYCCRYIPVS  660
LLDVIPQKIN WRPPSYFGRD DMETLMASES AADWIRISEM LLGKVPSGFT FSPKHKSNAY  720
DKAENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A4e-2637162127269tRNA-dihydrouridine synthase B
6ei9_B4e-2637162127269tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088543.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLS8DPT50.0S8DPT5_9LAMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGMigut.B00123.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80391923
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]