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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS65020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | LBD | ||||||||
Protein Properties | Length: 111aa MW: 13046.1 Da PI: 9.8451 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.5 | 8.4e-42 | 6 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkC+++C+lapyfpa++p+ f+nvh+lFG+snv+k+l++l++++ r+dam+s++yeA++r r Pv+G+ +vi++l++qle l++el + EPS65020.1 6 ACAACKYQRRKCTPNCPLAPYFPASEPRMFQNVHRLFGVSNVTKILRQLRNKDhRDDAMKSIIYEADMRRRFPVHGCSAVIHQLRWQLEYLANELRFVC 104 7************************************************66555****************************************98776 PP DUF260 99 e 99 + EPS65020.1 105 S 105 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.001 | 5 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-40 | 6 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
GSNNLACAAC KYQRRKCTPN CPLAPYFPAS EPRMFQNVHR LFGVSNVTKI LRQLRNKDHR 60 DDAMKSIIYE ADMRRRFPVH GCSAVIHQLR WQLEYLANEL RFVCSQLESY R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-29 | 7 | 107 | 12 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-29 | 7 | 107 | 12 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022843049.1 | 4e-52 | LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 8e-38 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | S8CDT2 | 2e-78 | S8CDT2_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.K01343.1.p | 3e-44 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-40 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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