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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS64829.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 127aa MW: 14455.5 Da PI: 11.1541 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.9 | 4.1e-21 | 12 | 60 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++i++++n qvtfskRr+gi+KKA EL +L++ae+av+ifs+ +k + + EPS64829.1 12 EKIKSETNLQVTFSKRRQGIFKKATELTTLTGAEAAVVIFSPADKPHSF 60 579***************************************9987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.993 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-28 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-24 | 5 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-15 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.9E-23 | 13 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-15 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-15 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
KKGTGRKKVL MEKIKSETNL QVTFSKRRQG IFKKATELTT LTGAEAAVVI FSPADKPHSF 60 GHPDVHSVIN RSRRNLPPEN AASPADRILS TRENAAAAHR RRNDELIRTE VELEKEKKRK 120 QELDRFK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 119 | RRRNDELIRTEVELEKEKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088150.1 | 3e-33 | agamous-like MADS-box protein AGL18 | ||||
Swissprot | Q9FKK2 | 1e-29 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | S8CD32 | 2e-86 | S8CD32_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | AES61073 | 2e-32 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-19 | AGAMOUS-like 62 |