PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB

Protein Properties

Length: 280aa MW: 31548.7 Da PI: 7.4378

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS64660.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.6e-14	4	49	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEd+ l++ vk++G+++W++I ++ ++Rt+k+c++rw + EPS64660.1 4 KGPWKPEEDQVLINHVKKYGPRDWSSIRSKGLLKRTGKSCRLRWVN 49 79***********************888779*********87 PP
2	Myb_DNA-binding	43.4	7.8e-14	60	99	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE++ +++ +q+G++ W++Ia ++ gRt++++k++w EPS64660.1 60 KFSPEEEKTVLELQAQFGNR-WAKIATYLT-GRTDNDVKNFW 99 89****************.****9.********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.007	1	55	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-21	2	52	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-28	2	99	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-12	3	53	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-12	4	49	IPR001005	SANT/Myb domain
CDD	cd00167	4.96E-13	6	51	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.4E-18	53	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.15	56	107	IPR017930	Myb domain
SMART	SM00717	2.8E-12	57	105	IPR001005	SANT/Myb domain
CDD	cd00167	1.26E-10	60	99	No hit	No description
Pfam	PF00249	1.2E-12	60	99	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
DIKKGPWKPE EDQVLINHVK KYGPRDWSSI RSKGLLKRTG KSCRLRWVNK LRPDLKNGVK 60 FSPEEEKTVL ELQAQFGNRW AKIATYLTGR TDNDVKNFWS SRQKRIARMQ GGTTSPPSPN 120 KTATSAKETK LSVVHDVSPS EAVKFLCSST TTDEESVITM PRQLLPLPPL GNPISRCYGS 180 SSFFPLELSY ESKPQFFVEQ PQSFFPRPQH PLLDFFGNYS EPTLSGTAFL PQLPDEAAAL 240 GGGMMDSSFQ SENVDDAFLD EFPLMDLFDE IEPLPSPSKW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-28	1	105	24	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022867574.1	2e-81	transcription factor DUO1-like
TrEMBL	S8CCM5	0.0	S8CCM5_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009768446.1	7e-79	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4207	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	4e-67	MYB family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]