PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64600.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRAS
Protein Properties Length: 392aa    MW: 44466.6 Da    PI: 7.6706
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64600.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.32.6e-120273921373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 +++lL+++Ae++s +d+++a+++L+ ls  +sp+gd+++Rl++ ft+AL  rla+  ++ ++  ++ +   +   +  +++ ++++v+P+++fs+ltaN
  EPS64600.1  27 MRQLLITAAEMISRSDFTAASRMLTLLSASSSPYGDSTERLVHQFTKALTLRLAG--PGFFRVPTSVNP--TAARDLQSSYLALNQVTPFIRFSQLTAN 121
                 589***************************************************9..888864433333..457788889999**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.... 194
                 qaIle +eg++++Hi+Dfdi++G+QWp+L+qaLa++  +ppslRiTg gs    + + l++tg+rLakfA++lg++f+fn+l+ +  ++ +++ +    
  EPS64600.1 122 QAILETIEGQHAIHIVDFDIMHGVQWPPLMQALAEK-FPPPSLRITGTGS----DLDILRRTGDRLAKFAHSLGLRFQFNPLIIR-DDEQNPQIIfssp 214
                 ***********************************8.899**********....9**************************8554.4444454442211 PP

        GRAS 195 ..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                    ++p+E+laVn+ + lhr l+++ +l+     +L+ +ksl P ++ ++e+ea+hn++ F +rf+eal++y ++fdslea+lp++s++r  vE+ ++g
  EPS64600.1 215 aiILSPEETLAVNFNHYLHRHLRDRDALRL----FLRRIKSLGPAIISLAEREANHNHPIFHHRFVEALNHYGVVFDSLEATLPPNSHDRYAVEQIWFG 309
                 116777****************88777777....***************************************************************** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                 +ei ++va+eg+ rrerhe++++W  +++++GF++v+ls +a++qaklllr ++ s+gy+++  ++sl+lgW+++pL+svS+W
  EPS64600.1 310 KEIADIVAAEGEVRRERHERFRSWDLMMRSCGFNNVALSPFAVSQAKLLLRLHYpSEGYQLHVFNDSLFLGWQNQPLFSVSSW 392
                 *********************************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.9711372IPR005202Transcription factor GRAS
PfamPF035149.0E-11827392IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
SSQDYDKEGH APPRPGVYLH SPPGTHMRQL LITAAEMISR SDFTAASRML TLLSASSSPY  60
GDSTERLVHQ FTKALTLRLA GPGFFRVPTS VNPTAARDLQ SSYLALNQVT PFIRFSQLTA  120
NQAILETIEG QHAIHIVDFD IMHGVQWPPL MQALAEKFPP PSLRITGTGS DLDILRRTGD  180
RLAKFAHSLG LRFQFNPLII RDDEQNPQII FSSPAIILSP EETLAVNFNH YLHRHLRDRD  240
ALRLFLRRIK SLGPAIISLA EREANHNHPI FHHRFVEALN HYGVVFDSLE ATLPPNSHDR  300
YAVEQIWFGK EIADIVAAEG EVRRERHERF RSWDLMMRSC GFNNVALSPF AVSQAKLLLR  360
LHYPSEGYQL HVFNDSLFLG WQNQPLFSVS SW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-663439226378Protein SCARECROW
5b3h_A5e-663439225377Protein SCARECROW
5b3h_D5e-663439225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095666.10.0scarecrow-like protein 18
RefseqXP_022878688.10.0scarecrow-like protein 18
SwissprotQ9ZWC51e-120SCL18_ARATH; Scarecrow-like protein 18
TrEMBLS8CCG30.0S8CCG3_9LAMI; Lateral suppressor protein (Fragment)
STRINGXP_009765072.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-117GRAS family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]