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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS64429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C3H | ||||||||
Protein Properties | Length: 79aa MW: 9014.98 Da PI: 8.3902 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.6 | 7.7e-07 | 4 | 23 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr f + G C+ Gd+C+F+H EPS64429.1 4 PCREFVK-GKCRWGDSCRFSH 23 7******.************* PP | |||||||
2 | zf-CCCH | 23.7 | 8.7e-08 | 52 | 73 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +lC+ffa G C++ d C+F+H+ EPS64429.1 52 KPLCKFFAI-GKCSR-DDCRFSHD 73 58***9998.*****.*******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0054 | 1 | 25 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.788 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-6 | 4 | 24 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 4 | 41 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 4 | 23 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.742 | 49 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-5 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.016 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-5 | 52 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
SNGPCREFVK GKCRWGDSCR FSHRLASEEK EPSRHSHSES EAQNQPPYKD AKPLCKFFAI 60 GKCSRDDCRF SHDDPRAAT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020547389.1 | 9e-20 | zinc finger CCCH domain-containing protein 55 | ||||
Refseq | XP_020547390.1 | 9e-20 | zinc finger CCCH domain-containing protein 55 | ||||
Refseq | XP_020547391.1 | 9e-20 | zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | S8CBV9 | 7e-51 | S8CBV9_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.N03235.1.p | 3e-18 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5255 | 20 | 29 |
Publications ? help Back to Top | |||
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