PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS64094.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | ARF | ||||||||
Protein Properties | Length: 892aa MW: 98463 Da PI: 6.6728 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.9 | 1.9e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + +++ +l EPS64094.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELSVKDLHDQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLVAGDGVLFVR--DERSRL 221 99*****************************954.4444.49************************************************4..466667 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ EPS64094.1 222 LLGIRRA 228 9999997 PP | |||||||
2 | Auxin_resp | 117.5 | 1.1e-38 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPr+++s+Fv++++k++kal+++vs+GmRf+m+fe+e+s rr++Gtv+g+sdldp+rW++S+Wr+L+ EPS64094.1 253 AAHAAANNSPFTIFYNPRSCRSDFVIPLAKYNKALYTQVSPGMRFRMMFESEESGLRRYMGTVTGISDLDPTRWKGSQWRNLQ 335 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.62E-43 | 115 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-40 | 119 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.29E-21 | 126 | 227 | No hit | No description |
SMART | SM01019 | 2.1E-22 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.661 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-33 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.7E-10 | 759 | 847 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.637 | 761 | 854 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.55E-8 | 764 | 839 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 892 aa Download sequence Send to blast |
MKIASTIATS SHSAEGGKKL INSELWHACA GPLVSLPNAG SLVVYFPQGH SEQVASSMQK 60 EADGIPSYPN LPSKLICMLH NVTLHADAET DEVYAQMTLQ PVGKYDQEAL IVSDIGLKHS 120 KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELSVK DLHDQTWTFR 180 HIYRGQPKRH LLTTGWSVFV SSKRLVAGDG VLFVRDERSR LLLGIRRANQ NQPVLSSSII 240 SSDSMHIGIL VAAAHAAANN SPFTIFYNPR SCRSDFVIPL AKYNKALYTQ VSPGMRFRMM 300 FESEESGLRR YMGTVTGISD LDPTRWKGSQ WRNLQVGWDE SNAGERPSRV SIWDIEPVIS 360 PFYICPPPFF RPRNPYFPDG DMDMECMLMR QGMMPLMGND LSFKDGSIFP GLNLVQRMSM 420 QNQLSSSANQ YGLVSSPIMQ TSSNFQANLQ QQGSLHPQQS PLLLTSSGGR MTCDHLATNQ 480 GLLQPSAVCS CRVQQQLPME QSELQQHCRK NGPHGAAAIE NLPFAAAQEG SLQLIHQEAK 540 SKTRSQQRMQ MQMPLVQKKV QMKGSSSLNP VMDFQQMNGI SFSPAASLQQ DAPVIPEDAP 600 SCSSMSHSRS NILLPQRILN FKNHADSSSQ LVRESSSHGN PDVGMKHELS SNSKAADIHL 660 DVTSPSPASC YLYAAANPLT ATDADDALLS RGYDSGKNLQ DLLFNYSDIP TPPTDMSSGI 720 QSQSFSVPNI SAKTVYMNDA DVNDVVVPNG GRWSNQTPRM RTYTKVQKRG SVGRTIDVNR 780 YKGYEELKQD LARMFAIEGL LGDQQRSEWK LVYVDHENDI LLVGDDPWEE FVGCVQSIKI 840 LSSAEVQQMS LDGGDHPAAG QQLNQACNNS ADGEATMIPW RGNYENNSAF DH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-170 | 18 | 356 | 48 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851206.1 | 0.0 | PREDICTED: auxin response factor 19-like | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | S8CAY5 | 0.0 | S8CAY5_9LAMI; Auxin response factor | ||||
STRING | Migut.J00900.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1302 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |