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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS63866.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | WRKY | ||||||||
Protein Properties | Length: 179aa MW: 19609.3 Da PI: 10.4743 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.7 | 4.2e-32 | 107 | 164 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+++dp+++++tYegeHnh+ EPS63866.1 107 DDFSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERATDDPSMLIVTYEGEHNHS 164 99***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.1E-17 | 57 | 103 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.0E-34 | 93 | 165 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.871 | 100 | 166 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-27 | 102 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-38 | 105 | 165 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-28 | 107 | 163 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
ERKESTTTIN FASPATSFRS SLTADTESLQ PSMSSGFQIT NLSHSAGRPP ISKSIFKRKC 60 NSMDDAGGKC GGGGSSRCHC PKKRKTRLKR VVRVPAISMK MADIPPDDFS WRKYGQKPIK 120 GSPHPRGYYK CSSIRGCPAR KHVERATDDP SMLIVTYEGE HNHSALSKNE SPPLVLQSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 93 | 163 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 73 | GGKCGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074403.1 | 1e-107 | probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 2e-66 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | S8CH62 | 1e-130 | S8CH62_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.N02732.1.p | 4e-98 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1220 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 4e-59 | WRKY DNA-binding protein 7 |
Publications ? help Back to Top | |||
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