PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63547.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

TCP

Protein Properties

Length: 255aa MW: 28533.2 Da PI: 9.8577

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63547.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	152.1	3.4e-47	2	128	3	136
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa..kskk 99 +kkd+h ki+T++g+RdRRvRls+++a++fFdLq++LGfdk+skt++WLl+++k+aik+l+ +++s+a ++ +ss++s++ ++ + + k kk EPS63547.1 2 TKKDKHRKIYTSQGPRDRRVRLSISIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKDLVMSKQSAAAAA--GSSKNSDA-----DEVSGSGskKWKK 93 79***********************************************************88888333..33333333.....3333333114444 PP TCP 100 sqksaasalnlakesrakarararertrekmriknkl 136 k++ +l+lakesr karararertrekm+ik+kl EPS63547.1 94 VAKDS--HLDLAKESRVKARARARERTREKMCIKQKL 128 44555..5************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.3E-35	1	123	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.877	3	61	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	12.151	104	121	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
TTKKDKHRKI YTSQGPRDRR VRLSISIARK FFDLQEMLGF DKPSKTLDWL LTKSKTAIKD 60 LVMSKQSAAA AAGSSKNSDA DEVSGSGSKK WKKVAKDSHL DLAKESRVKA RARARERTRE 120 KMCIKQKLYE MRNNCCSSSS CHGGGFEFPP PIQYMNNQME ICKISGGCSR SSQDEGGGFH 180 CLGDHYDEVN QTDLIHESIV IKRKVKSFGF QQNLIMNSNS GYASPAAGTT ENWDISSYTS 240 QSDIYAILDQ HKLSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-13	9	61	2	54	Putative transcription factor PCF6
5zkt_B	5e-13	9	61	2	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:10571179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551451.1	2e-62	transcription factor DICHOTOMA-like
Swissprot	Q9SNW8	2e-46	DICH_ANTMA; Transcription factor DICHOTOMA
TrEMBL	S8DUG9	0.0	S8DUG9_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.K00858.1.p	4e-58	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4333	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	3e-25	TCP family protein

Publications ? help Back to Top
Luo D, et al. Control of organ asymmetry in flowers of Antirrhinum. Cell, 1999. 99(4): p. 367-76 [PMID:10571179] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]