PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63462.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 176aa MW: 20243.5 Da PI: 10.3942

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63462.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	37	57	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H EPS63462.1 37 CEICNKGFQRDQNLQLHRRGH 57 *******************88 PP
2	zf-C2H2	13.1	0.00029	114	136	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + EPS63462.1 114 WKCDKCSKKYAVQSDWKAHSKIC 136 58*****************9876 PP
3	zf-C2H2	11.8	0.00073	144	162	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++ +H + EPS63462.1 144 DCGTIFSRKDSFITHRAFC 162 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.8E-6	34	57	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.81E-8	34	57	No hit	No description
SMART	SM00355	0.11	35	57	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.824	35	57	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	79	109	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.0E-5	102	135	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.81E-8	109	134	No hit	No description
SMART	SM00355	150	114	134	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
NAIIKMKRRS LPGTPDPDAE VIALSPKTLM ATNRFLCEIC NKGFQRDQNL QLHRRGHNLP 60 WKLKQRSTNN KDQMKKKVYI CPEKACVHHD PARALGDLTG IKKHFSRKHG EKKWKCDKCS 120 KKYAVQSDWK AHSKICGTRE YKCDCGTIFS RKDSFITHRA FCDALAEEST RLKTVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	110	175	3	68	Zinc finger protein JACKDAW
5b3h_F	2e-36	110	175	3	68	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094681.1	1e-115	protein indeterminate-domain 9
Swissprot	Q944L3	1e-108	IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBL	S8DUA8	1e-129	S8DUA8_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_006480617.1	1e-112	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-100	C2H2-like zinc finger protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]