PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63361.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HB-other

Protein Properties

Length: 160aa MW: 18709 Da PI: 8.6775

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63361.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.8e-19	19	71	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ t+eq++eLe+++ + ++ps+++reeL++kl+++ +Vk+WFqN+R+++k EPS63361.1 19 YRRQTPEQIQELENFYTNYPHPSKSQREELSQKLHMEPMKVKFWFQNKRTQMK 71 56789*********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-18	4	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.78E-17	8	71	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.677	13	73	IPR001356	Homeobox domain
SMART	SM00389	4.0E-14	14	77	IPR001356	Homeobox domain
CDD	cd00086	3.00E-13	16	71	No hit	No description
Pfam	PF00046	1.3E-16	19	71	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	48	71	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
NSGEESSGAV GQQRKRGRYR RQTPEQIQEL ENFYTNYPHP SKSQREELSQ KLHMEPMKVK 60 FWFQNKRTQM KVKYGKEENI RLRVENEKIH IENTMLREAL SSARCSECGA VSSTSNMTDE 120 ERNLRIENDR LKVEISRISA MAAQYVGKTF DEEETPLPPP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	A3BPF2	5e-44	ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBL	S8CFV1	1e-115	S8CFV1_9LAMI; Uncharacterized protein (Fragment)
STRING	Pavir.J18262.1.p	5e-46	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13806	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	2e-42	protodermal factor 2

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]