PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EPS63328.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB_related

Protein Properties

Length: 286aa MW: 30732.8 Da PI: 5.886

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63328.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.3	6.5e-12	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +++++G g W+tI + R+ ++k++w+++ EPS63328.1 5 KQKWTSEEEAALKAGIQKYGAGKWSTILKDPEfnvilRSRSNVDLKDKWRNL 56 79************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.422	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	9.72E-16	2	58	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-6	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-8	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	2.99E-21	6	57	No hit	No description
SMART	SM00526	2.5E-12	119	185	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	7.62E-15	122	194	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	21.372	122	190	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.4E-15	124	192	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	3.3E-10	126	183	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MGAPKQKWTS EEEAALKAGI QKYGAGKWST ILKDPEFNVI LRSRSNVDLK DKWRNLNCMA 60 SGLGSRHRSS VSMRSSSSAP KNDEDAAAVN GMEIDREIVP FDATTPVAAS NAANLDSGSK 120 NQISRLEDVI MEAVSKLKEP RGSSRQSILD YVEDHYMTPP EFGKILSARL KLLTENGKLI 180 KVKHQYRIAP SAALLNPSKV PTATATGVKR DGCEDSVVVI TKAQVDAELE KMKCMTAEEA 240 AAAAAQAVAE AEAAIEAAEI AAREAEEAEA EAEAARCFAI ATRKAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099387.1	6e-95	telomere repeat-binding factor 1 isoform X3
TrEMBL	S8DKH4	0.0	S8DKH4_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.H00343.1.p	1e-92	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5122	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-59	telomere repeat binding factor 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]