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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
EPS63285.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family |
ARF |
Protein Properties |
Length: 503aa MW: 56997.8 Da PI: 8.8963 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
EPS63285.1 | genome | LSMU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 78.8 | 5.6e-25 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
f+k+ltpsd++++g +++ k++a+e+ + k++ +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+
EPS63285.1 115 FCKTLTPSDTSTHGGFSVLKRHADEClpqldmS-KQPPTQELVAKDLHGNEWRFRHIFRGQPKRHLLQSGWSVFVSSKRLVTGDAFIFL--RGENGELR 210
99****************************963.4445569************************************************..449999** PP
EEEE-S CS
B3 94 vkvfrk 99
v+v+r+
EPS63285.1 211 VGVRRA 216
***996 PP
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2 | Auxin_resp | 118.3 | 6e-39 | 241 | 323 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k+++svGmRfkm+fe+e+++e+r++Gt+vg++d+d rWp+SkWr+Lk
EPS63285.1 241 AWHAIQTKTMFTVYYKPRTSPTEFIVPFDRYMESVKNNYSVGMRFKMKFEGEEAPEQRFTGTIVGLEDSDAKRWPGSKWRCLK 323
89*******************************************************************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0008285 | Biological Process | negative regulation of cell proliferation |
GO:0009734 | Biological Process | auxin-activated signaling pathway |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009911 | Biological Process | positive regulation of flower development |
GO:0010047 | Biological Process | fruit dehiscence |
GO:0010150 | Biological Process | leaf senescence |
GO:0010227 | Biological Process | floral organ abscission |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0048481 | Biological Process | plant ovule development |
GO:0005634 | Cellular Component | nucleus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 503 aa
Download sequence Send
to blast |
KAVDTEAALY TELWKACAGP LVTVPRKQEL VFYFPQGHME QVEASTNQSA DQQMPVYNLP 60 SKILCRVVNV QLKAEVETDE VYAQITLMPE PNQDENEVKR EHPPPPSPRF RVRSFCKTLT 120 PSDTSTHGGF SVLKRHADEC LPQLDMSKQP PTQELVAKDL HGNEWRFRHI FRGQPKRHLL 180 QSGWSVFVSS KRLVTGDAFI FLRGENGELR VGVRRAMRQQ GNAPSSVISS QSMHIGVLAT 240 AWHAIQTKTM FTVYYKPRTS PTEFIVPFDR YMESVKNNYS VGMRFKMKFE GEEAPEQRFT 300 GTIVGLEDSD AKRWPGSKWR CLKVRWDETL SVPRPERVSP WNIEHALTLP TLNPVPVART 360 KRPRPSALPS FSESSVLTRE GSSKMIMDPL PGGTVFPGIV LPEVPESENS EKPSLLWNTL 420 LDDEKVDVST PRRFTSEKWL PMGRQDPSFG NILSGFEPPI NPPRSFGRDH ETKFSFHGNI 480 PSSGLSFSLT DSTSKKNHDH WSM
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Publications
? help Back to Top |
- Tomato Genome Consortium
The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] - Leushkin EV, et al.
The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] - Breitel DA, et al.
AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening. PLoS Genet., 2016. 12(3): p. e1005903 [PMID:26959229] - Xu T, et al.
SlARF2a plays a negative role in mediating axillary shoot formation. Sci Rep, 2016. 6: p. 33728 [PMID:27645097] - Ren Z,Liu R,Gu W,Dong X
The Solanum lycopersicum auxin response factor SlARF2 participates in regulating lateral root formation and flower organ senescence. Plant Sci., 2017. 256: p. 103-111 [PMID:28167023]
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