PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63224.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 306aa MW: 32677.3 Da PI: 10.1464

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63224.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.5e-39	35	94	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ EPS63224.1 35 EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 94 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-36	18	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	37	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
LLPPVPPAQH PAAHGGLRPG SMAERARLAN IQIPEAALKC PRCESTNTKF CYFNNYSLTQ 60 PRHFCKTCRR YWTRGGALRN VPVGGGCRRN KRSKTSSGSS TTTTTKSPAS SDRHANGGAA 120 NSSSNATIST TNGGSLLGLN PQLTPPLRFI SPLTHQLTDA FTSDMVGLSY NAMAPPILGT 180 NEVPNFTGNN NNNHNSVLDT WRLQQYPFLS GLETSHFWAA GDSSFMAGET SNNNNNNNQV 240 SVRPAPKLQN SILGGVKMEG TLPQLNISRH LMGGLQGGNE QWNAGAGGAP WNELSSFSSS 300 STSNHL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095199.1	1e-80	dof zinc finger protein DOF5.1
TrEMBL	S8C8L8	0.0	S8C8L8_9LAMI; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	3e-46	DNA binding with one finger 2.4

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]