PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63200.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family LBD
Protein Properties Length: 242aa    MW: 27173.8 Da    PI: 7.0822
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63200.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.54.2e-4271061100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk lrrkC+++Cv+apyfp ++p+kf nvhk+FGasnv k+l++l+  +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ +l+++k+
  EPS63200.1   7 PCAACKCLRRKCTHECVFAPYFPPDNPQKFTNVHKVFGASNVAKILNELSAAQREDAVNSLAYEAEYRLRDPVYGCVGLISILQHRLKQVQIDLETAKK 105
                 7**********************************************************************************************9998 PP

      DUF260 100 e 100
                 e
  EPS63200.1 106 E 106
                 7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.1816107IPR004883Lateral organ boundaries, LOB
PfamPF031957.5E-427104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSSSNSPCAA CKCLRRKCTH ECVFAPYFPP DNPQKFTNVH KVFGASNVAK ILNELSAAQR  60
EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HRLKQVQIDL ETAKKELVSY VGPSAMLPIL  120
SHPTSQPSAP YMASAYQMMG YHHQQQQQQQ LQHQPMMGVL HNGPQMVIGE PQVHQQQHQQ  180
PHFFEAQQMM RCYELQQQQQ AQTQNDLARF NSDFEDVAAM VNLDITGGGR YNQIPTAAAA  240
VT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-4831217130LOB family transfactor Ramosa2.1
5ly0_B6e-4831217130LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554582.12e-90LOB domain-containing protein 36
SwissprotQ9FKZ35e-72LBD36_ARATH; LOB domain-containing protein 36
TrEMBLS8C8P81e-180S8C8P8_9LAMI; Uncharacterized protein (Fragment)
STRINGcassava4.1_027088m2e-77(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-70ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  3. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]