PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EPS63160.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GATA

Protein Properties

Length: 312aa MW: 33955.8 Da PI: 6.365

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63160.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.1	1.2e-18	245	278	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C++ kTp+WR gp g+ktLCnaCG+++++ + EPS63160.1 245 CTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 278 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	8.1E-76	6	312	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	7.9E-14	239	289	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.952	239	275	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.4E-14	242	276	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	3.33E-14	242	302	No hit	No description
CDD	cd00202	6.73E-14	244	292	No hit	No description
Pfam	PF00320	2.5E-16	245	278	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	245	270	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
GVMECIEARA LKASFLSQMA MKATSQAFYN DDGWCLTGVP SEDFPVEDLL NLDFSDKEFQ 60 DAAAGLFKED QDSSNKGGSN NSSSTFSGAD DFDSLSSGNL HVPVEEDLDN LEWLSQFADD 120 STAAGASLFP IGNFPSRASV KSEAAVDERA FIIPPPVPRK SRSKRERSNG QSWSLTSPQL 180 SSVDSSTASS SSYTSTPPLP ILLFLNAAPA AAQEPDWFST VEKPPAKKPK RKPEPESGGL 240 SGRRCTHCQV QKTPQWRTGP LGPKTLCNAC GVRFKSGRLF PEYRPACSPT FSHDVHSNSH 300 RKVLEMRRKK EA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	165	RKSRSKRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088480.2	1e-129	GATA transcription factor 5-like
Refseq	XP_020551667.1	1e-129	GATA transcription factor 5-like
TrEMBL	S8C8L2	0.0	S8C8L2_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.B00182.1.p	1e-111	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1154	24	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36240.1	4e-41	GATA transcription factor 7

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]