PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

LBD

Protein Properties

Length: 152aa MW: 17111.4 Da PI: 4.959

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63137.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.4	5.1e-43	4	104	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++C+lapyfp ++p kf +h++FGasn++k+lk+lpee+r+da+ss+vyeA+ar+rdPvyG++g i++lq+q+++l+++la++++ EPS63137.1 4 PCAACKILRRRCEEKCILAPYFPPNDPFKFTTAHRVFGASNIIKFLKELPEEQRPDAVSSMVYEAKARLRDPVYGSAGAIFQLQRQVNELQEQLAKARA 102 7***********************************************************************************************998 PP DUF260 100 el 101 +l EPS63137.1 103 QL 104 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.445	3	104	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-42	4	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
VVGPCAACKI LRRRCEEKCI LAPYFPPNDP FKFTTAHRVF GASNIIKFLK ELPEEQRPDA 60 VSSMVYEAKA RLRDPVYGSA GAIFQLQRQV NELQEQLAKA RAQLVNIQCQ NDSLLALVFM 120 DRVDDNVNDD PYFYCFDDHS AGASFFDDGN VG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	4	109	11	116	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	4	109	11	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090094.1	7e-72	LOB domain-containing protein 1
Swissprot	Q9LQR0	7e-63	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	S8DTI7	1e-108	S8DTI7_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009772858.1	2e-68	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-65	LOB domain-containing protein 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]