PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EPS63024.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bZIP

Protein Properties

Length: 287aa MW: 31079.8 Da PI: 7.2488

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63024.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	72.3	7.1e-23	194	256	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e kr++rkq+NRe+ArrsR+RK+ae+e+L++kv++L++eN+aL++el++ ++e++kl++e+ EPS63024.1 194 EREMKRQKRKQSNRESARRSRLRKQAECERLQQKVETLTNENRALRDELQRVTEECDKLEAEN 256 799********************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.9E-18	193	253	No hit	No description
Pfam	PF00170	2.9E-21	194	256	IPR004827	Basic-leucine zipper domain
SMART	SM00338	2.0E-20	194	258	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.967	196	259	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-11	197	253	No hit	No description
CDD	cd14702	1.70E-20	199	250	No hit	No description
PROSITE pattern	PS00036	0	201	216	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
PSIPLWHLME LLYHFRLCIL LVEPMFILIL LCPVAAAQGT SESEAKSADG NERARKKSKR 60 ASGSDSKNAA AAASGSGNDV ATQSAESGSE GSSDGSEDDN GKGYCVAAKK GSFDQMLADG 120 QELKCAIAQS NGVPNNYRGA AGVAVPATNP NIGMDIWRSS SAGSGASKLH QTPPGVSPAV 180 CEYRIKSIFF FLDEREMKRQ KRKQSNRESA RRSRLRKQAE CERLQQKVET LTNENRALRD 240 ELQRVTEECD KLEAENDTIK EELSGFCGPE MLLSKLGRSS SPSMTGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	216	RRSRLRK
2	210	217	RRSRLRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097214.1	1e-78	G-box-binding factor 1-like isoform X1
Refseq	XP_011097215.1	4e-79	G-box-binding factor 1-like isoform X2
TrEMBL	S8C852	0.0	S8C852_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_010070038.1	5e-72	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3780	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.2	2e-39	G-box binding factor 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]