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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS62629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | GRAS | ||||||||
Protein Properties | Length: 693aa MW: 77862 Da PI: 5.0081 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 348.7 | 9.2e-107 | 319 | 690 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+ v+++d + a + L + +++sp+gd+ qRla++f+ +L+arl ++++ely++l+ ++ s e+l+a++++ ++P+ k+ aN EPS62629.1 319 LRTLLISCAQSVAADDRRTAYEQLMLIDQHSSPTGDAYQRLAHVFATGLRARLCGTGTELYASLSQRKIS---AFEKLKAYQVYLCACPFKKLPMSFAN 414 6789***********************************************************9999998...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +I a++ ++++Hi+Df+i +G+QWpa++q L+ Rp+gpp+lRiTgv+ p++g +e++ etg+rL+++++++gv+fe++++v +++e+++le++++ EPS62629.1 415 MMIGSALADASKLHIVDFGILYGFQWPAIIQCLSLRPGGPPKLRITGVELPQPGfkPEERVMETGRRLKNYCDRFGVSFEYQAIVRQSWESIKLEDFKI 513 *****************************************************999******************************************* PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 ++E+laVn+ ++ rllde+v ++s+rd++Lkl+++++P+++v + +++++ F++rf eal +ysalfd+++a++pr+s er+ E+e+lgre++ EPS62629.1 514 ASDEVLAVNCLFRFGRLLDETVIVDSPRDALLKLIRKMKPDLFVNAVISGSYSAPFFVTRFKEALFHYSALFDMFDANIPRDSPERMDFEQEFLGREVM 612 *************************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 nv+acegaer+er et+++W++r +aGFkp+pl+ ++++ + + + + + +e ++++lgWk+r + + S+W EPS62629.1 613 NVIACEGAERVERPETYKQWHARHVRAGFKPLPLNRPIMEKLRGKCKAGYHRDFLFDEGGNWMLLGWKGRIICASSCW 690 **********************************************9999889************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.132 | 293 | 671 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-104 | 319 | 690 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MDPRLSEMST AVNGFKLENG NFSSSLGQLP YLDDGINHDL GLDDFDIPFF AVTPEIDSFG 60 PSSTTSYETR SPDDLESDEV LKFFNQILVE ENTEEKFSMF HDPLALRDAE KSLYEVIGQK 120 YPPSPYNTVA YINQTSDSPE SIIESSSGYS TSSNTGNSSM HPQLINIFSN SDSILQFKKG 180 MEEASKFLPI NNHLIIDLEK YALPEKSDDI THSADVVAEQ DEAGDSSYSG RGRKHNFPED 240 KYSERLERSS KQSATSVEEV ELSEYFEKVL LCSEVAGCGG DAKSPIVEKP SSQEILLAKD 300 SNLKSRGKKS DSDGETVDLR TLLISCAQSV AADDRRTAYE QLMLIDQHSS PTGDAYQRLA 360 HVFATGLRAR LCGTGTELYA SLSQRKISAF EKLKAYQVYL CACPFKKLPM SFANMMIGSA 420 LADASKLHIV DFGILYGFQW PAIIQCLSLR PGGPPKLRIT GVELPQPGFK PEERVMETGR 480 RLKNYCDRFG VSFEYQAIVR QSWESIKLED FKIASDEVLA VNCLFRFGRL LDETVIVDSP 540 RDALLKLIRK MKPDLFVNAV ISGSYSAPFF VTRFKEALFH YSALFDMFDA NIPRDSPERM 600 DFEQEFLGRE VMNVIACEGA ERVERPETYK QWHARHVRAG FKPLPLNRPI MEKLRGKCKA 660 GYHRDFLFDE GGNWMLLGWK GRIICASSCW VPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-48 | 323 | 690 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089502.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020552354.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020552355.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | S8C768 | 0.0 | S8C768_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D02079.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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