PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EPS62318.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 149aa MW: 17108.4 Da PI: 10.0368

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62318.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.7	2.4e-14	93	135	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR++iN++f L +l+P++ +K++K++iL +++eY+++L+ EPS62318.1 93 SERKRREKINERFLILGSLVPSD-----GKVDKVSILDHTIEYLRELE 135 7*******************9.....9**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.974	85	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.10E-12	88	139	No hit	No description
SuperFamily	SSF47459	2.22E-17	88	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	89	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-16	91	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.9E-12	92	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
ETHYRSLLSN LLKGSHQLIL GPYSRNGNGE SSFKCWVSDG TSPRSITPPQ SLLKKVLLEV 60 PRLLQTRTSG VSEQRRNNLK PESDENDRNR VLSERKRREK INERFLILGS LVPSDGKVDK 120 VSILDHTIEY LRELESKVEE LRSRKEAVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	98	ERKRRE
2	94	99	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072770.1	1e-46	transcription factor EGL1-like
TrEMBL	S8DHK3	1e-101	S8DHK3_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.A00733.1.p	9e-47	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4576	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	4e-34	bHLH family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]