PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62063.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

M-type_MADS

Protein Properties

Length: 267aa MW: 30868.9 Da PI: 6.6071

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62063.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.4	1.9e-13	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i ++ r t+ kR+ g++KK +E +LCd+++++ii+++++ EPS62063.1 11 ITKDRPRIATYKKRKSGLIKKLSEFTTLCDVKACMIIYGPKQ 52 566778999******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.5E-12	1	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.909	1	51	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.21E-20	2	81	No hit	No description
SuperFamily	SSF55455	2.88E-17	2	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-6	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.6E-14	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-6	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-6	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MGRAKLNMEL ITKDRPRIAT YKKRKSGLIK KLSEFTTLCD VKACMIIYGP KQDGGAAEPE 60 IWPENPEEVR RIIEIYEAKS KDSGNKTFGL PDFFQERKKK FKDELDKLNK RSMEAKYPTW 120 FDFMNFLTES QLRDFAAALT NKIEYVKSRI EFLRNDGNNG GLFDVGLMDS SPFYPPEIRG 180 NEFEMINQEF RPFEMNLPII FSGADHHHQQ DVENTMMMLL MNENSNNVDD HCLPIVGSSS 240 SSSSTASTSG NFQFRHHHHH QVFYEST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	24	PRIATYKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552001.1	6e-88	agamous-like MADS-box protein AGL14
TrEMBL	S8DGW3	0.0	S8DGW3_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.B00770.1.p	1e-67	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2457	22	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	5e-27	M-type_MADS family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]