PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61813.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 346aa    MW: 38641.4 Da    PI: 6.9861
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61813.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.71.2e-15260285126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ +++tGtC+yG++C+FaHg
  EPS61813.1 260 FKTELCNKWQQTGTCPYGNNCQFAHG 285
                 79***********************8 PP
2zf-CCCH17.48e-06298323126
                 --S---SGGGGTS.--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                 ykte Cr  +  G  C+yG rC+F H+
  EPS61813.1 298 YKTEVCRMVLN-GvPCPYGHRCHFRHS 323
                 99*****9999.67**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.4E-19254292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-11256291IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-9259286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.502259287IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-12260285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-11293326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-8293327IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.469297325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MQREDMSVSG HEKPNVSLDS TSLDDAGDDC VYPSAFYPSM FLSMRSNLLN DGSPLSSSLA  60
ETDDELESLY SQIQQKLHQD LMGRYQSVLS ELRIVAKQAH DLHQENVNLK MVNLDLNNRL  120
KMLLRPTSFH GFEPVAGPPE VYDGLKKMHL GPEEGTSETT PTTTNKEAKS PTSAVDSAQP  180
QTDPVGPPER RIHLPKSISV RSSGYLKATR SSGNSNTAHG GASVKTPDKG KFDIEMQKVY  240
VKGGKTEQPL ELEVYNQGMF KTELCNKWQQ TGTCPYGNNC QFAHGIRELR PVLRHPRYKT  300
EVCRMVLNGV PCPYGHRCHF RHSLTDQENL TRAMNAANSL DPFIYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21260323467Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076170.11e-115zinc finger CCCH domain-containing protein 15
RefseqXP_011076178.11e-115zinc finger CCCH domain-containing protein 15
RefseqXP_011076187.11e-115zinc finger CCCH domain-containing protein 15
TrEMBLS8DG710.0S8DG71_9LAMI; Uncharacterized protein
STRINGMigut.L01008.1.p1e-112(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-58C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]