PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

YABBY

Protein Properties

Length: 121aa MW: 13530.7 Da PI: 9.4866

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS61311.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	100.9	2.8e-31	2	121	2	134
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 +v s++v yv+CnfCntil+v vP + l+++ tvrC C++llsvnl+ + + ++ ++++ +++ ++ s+s+ ++ EPS61311.1 2 SVEMVSDRVSYVHCNFCNTILVVGVPCSNLLTIATVRCERCSNLLSVNLSGSLPQSLHRQD--------FQKQKS--LAAIDLPFKEIGSSSKCKRLCP 90 67889*****************************************9987533322222........222222..2334444444444555555555 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfik 134 +s++++ ++++ p irPPekrqrvPsaynrfik EPS61311.1 91 MSNDDQ--ATKTSP-IRPPEKRQRVPSAYNRFIK 121 555444..445556.9***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.3E-36	6	121	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MSVEMVSDRV SYVHCNFCNT ILVVGVPCSN LLTIATVRCE RCSNLLSVNL SGSLPQSLHR 60 QDFQKQKSLA AIDLPFKEIG SSSKCKRLCP MSNDDQATKT SPIRPPEKRQ RVPSAYNRFI 120 K

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552308.1	6e-49	putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	2e-32	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	S8CAB8	1e-83	S8CAB8_9LAMI; Uncharacterized protein
STRING	Gorai.001G127000.1	9e-41	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	8e-28	YABBY family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]