PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

ZF-HD

Protein Properties

Length: 208aa MW: 22750.7 Da PI: 9.6231

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS61290.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.3	6.8e-32	7	62	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++YkeClkNhAa++Gg+++DGCgEfmps ge+gt++alkCaAC CHRnFHR+e++ EPS61290.1 7 RIVYKECLKNHAAKIGGNVTDGCGEFMPS-GEDGTIEALKCAACSCHRNFHRKEHHG 62 689***********************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.2E-29	8	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-24	8	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.6E-30	10	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.188	10	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.33E-19	114	186	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-30	120	186	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.9E-29	125	181	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
GVVGTGRIVY KECLKNHAAK IGGNVTDGCG EFMPSGEDGT IEALKCAACS CHRNFHRKEH 60 HGEAAGTAMV HPLQHRVVGG HWTSAMVQPV KMAFGGNAGT DSSSEELNFN PYHSGGGIPR 120 PSSTKKRFRT KFTADQKERM LEFAEKLGWR IPREDDSEIQ RFCAEVGVKR QVFKVWMHNN 180 KSASKKITIT PQTQHQHQVR GGGGGGPD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-25	124	183	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083674.1	2e-92	zinc-finger homeodomain protein 5
Swissprot	Q9M9S0	2e-63	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	S8C382	1e-154	S8C382_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.C00746.1.p	9e-81	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	2e-65	homeobox protein 31

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]