PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SRS

Protein Properties

Length: 374aa MW: 39383 Da PI: 7.3982

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60901.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.4	3.1e-67	140	306	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.................aeaaskrkrelkskkqs 84 g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaa rrerqq+l++++++ ++s+ +++++++++ + s++++ EPS60901.1 140 GGGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCSTHVKSTWVPAAVRRERQQRLSTLQQTPQNSShrdggaaaaagkrqrgeENNSNNNNNASPSNNNN 238 5789************************************************999988777667899886555544443211111222222445555 PP DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 al +t+++++ s le ++P+evsseavfrcvrvssvd+g+++laYqtav+i GhvfkGiLydqG+e+ EPS60901.1 239 ALVCTRIPTTLS--GLELGNFPAEVSSEAVFRCVRVSSVDEGDDQLAYQTAVNICGHVFKGILYDQGTES 306 666666665543..456666*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.6E-65	142	305	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.1E-27	144	186	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.7E-27	257	303	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010252	Biological Process	auxin homeostasis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048479	Biological Process	style development
GO:0048480	Biological Process	stigma development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MAGFFSLGTA TNNNNSSSSN NAAGGGTTPT PAADRDPPTE INPETWFLFR NEENNPYKGF 60 ELWQPQAEAG AHHHHPHHHH HHPSENFLQR GGVVGGSNTL QDLYASAGGL AVGPSRGSGF 120 SISGDHSPRS SFLMMRSSGG GGISCQDCGN QAKKDCAHMR CRTCCKSRGF QCSTHVKSTW 180 VPAAVRRERQ QRLSTLQQTP QNSSHRDGGA AAAAGKRQRG EENNSNNNNN ASPSNNNNAL 240 VCTRIPTTLS GLELGNFPAE VSSEAVFRCV RVSSVDEGDD QLAYQTAVNI CGHVFKGILY 300 DQGTESQYMA GETSSGGGSV SASAGAVQQL NLITGGGSAT ATSTAGASHL DPNLYPAPIN 360 SFISGTQFFP PPRP

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MAGFFSLGTA TNNNNSSSSN NAAGGGTTPT PAADRDPPTE INPETWFLFR NEENNPYKGF  60
ELWQPQAEAG AHHHHPHHHH HHPSENFLQR GGVVGGSNTL QDLYASAGGL AVGPSRGSGF  120
SISGDHSPRS SFLMMRSSGG GGISCQDCGN QAKKDCAHMR CRTCCKSRGF QCSTHVKSTW  180
VPAAVRRERQ QRLSTLQQTP QNSSHRDGGA AAAAGKRQRG EENNSNNNNN ASPSNNNNAL  240
VCTRIPTTLS GLELGNFPAE VSSEAVFRCV RVSSVDEGDD QLAYQTAVNI CGHVFKGILY  300
DQGTESQYMA GETSSGGGSV SASAGAVQQL NLITGGGSAT ATSTAGASHL DPNLYPAPIN  360
SFISGTQFFP PPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00613	PBM	Transfer from AT3G51060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100954.1	1e-136	protein SHORT INTERNODES
Swissprot	K4B6C9	1e-91	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	S8C990	0.0	S8C990_9LAMI; Uncharacterized protein
STRING	Migut.L00031.1.p	1e-114	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	2e-77	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]