PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

ERF

Protein Properties

Length: 135aa MW: 15268.1 Da PI: 10.3112

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60727.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	68.6	1.1e-21	70	120	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrdps+ + r++lg+f+taeeAa +++a+ +l+g+ EPS60727.1 70 KYRGVRQRP-WGKWAAEIRDPSK---KVRIWLGTFDTAEEAAMVYDNAAIRLRGP 120 8******.******964...6***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038123	1.8E-40	1	131	IPR017392	AP2/ERF transcription factor ERF/PTI6
Gene3D	G3DSA:3.30.730.10	3.7E-32	69	127	IPR001471	AP2/ERF domain
SMART	SM00380	3.5E-41	70	133	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.83E-23	70	127	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.065	70	127	IPR001471	AP2/ERF domain
CDD	cd00018	1.70E-31	70	126	No hit	No description
Pfam	PF00847	3.4E-14	70	119	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.7E-12	71	82	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.7E-12	93	109	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
RRVRFCFTDG DATDSSGDEN DCVLGFAAKR RRVKRFVNEV RILAADDLGR KESKSIKEGG 60 DRKNETASRK YRGVRQRPWG KWAAEIRDPS KKVRIWLGTF DTAEEAAMVY DNAAIRLRGP 120 DALTNFGKNP SDSDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-23	69	126	4	62	ATERF1
3gcc_A	5e-23	69	126	4	62	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	32	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021890968.1	4e-45	ethylene-responsive transcription factor CRF1
Swissprot	Q9SUE3	7e-42	CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBL	S8DM99	2e-92	S8DM99_9LAMI; Uncharacterized protein (Fragment)
STRING	evm.model.supercontig_122.27	2e-44	(Carica papaya)
STRING	XP_010482718.1	1e-43	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA494	23	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	3e-44	cytokinin response factor 4

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zwack PJ,Compton MA,Adams CI,Rashotte AM Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]