PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60198.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WRKY
Protein Properties Length: 107aa    MW: 11839.3 Da    PI: 10.507
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60198.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.11.1e-107797222
                --SS-EEEEEEE--TT-SS-E CS
        WRKY  2 dDgynWrKYGqKevkgsefpr 22
                +D ++WrKYGqK++kgs++pr
  EPS60198.1 77 SDSWAWRKYGQKPIKGSPYPR 97
                69******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-107197IPR003657WRKY domain
PROSITE profilePS5081112.3357197IPR003657WRKY domain
SuperFamilySSF1182902.48E-87498IPR003657WRKY domain
SMARTSM007748.0E-476107IPR003657WRKY domain
PfamPF031061.5E-67898IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MSINKQQRKA RSSGELDDVE YSPEDNNGAR DVRINSASLS KRSGKGGIHR RVVSVPVPLK  60
EMDGGRLKGD QSSAPPSDSW AWRKYGQKPI KGSPYPRYVS VDQLINV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022847988.11e-21probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP563e-17WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLS8DBT22e-70S8DBT2_9LAMI; Uncharacterized protein
STRINGLus100292522e-20(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-19WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]