PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60069.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

WRKY

Protein Properties

Length: 168aa MW: 19160.3 Da PI: 6.3587

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60069.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	85.1	6.3e-27	46	106	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SS...STTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversae...dpkvveitYegeHnhe 59 +Dgy+WrKYGqK++k+s++prsYYrC +C++kk+ver+ae d+++ ++tYeg H h+ EPS60069.1 46 EDGYKWRKYGQKSIKNSPNPRSYYRCRNGRCSAKKQVERAAEedgDEETYVVTYEGFHLHH 106 7************************************975444789********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	2.48E-23	43	106	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.4E-25	44	106	IPR003657	WRKY domain
SMART	SM00774	1.3E-29	45	107	IPR003657	WRKY domain
Pfam	PF03106	1.6E-24	46	106	IPR003657	WRKY domain
PROSITE profile	PS50811	22.607	46	108	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MESEGNDEPL FIFFMHGHGA RGVYKRSEEK CCSKYSLRVK KGWVGEDGYK WRKYGQKSIK 60 NSPNPRSYYR CRNGRCSAKK QVERAAEEDG DEETYVVTYE GFHLHHFGRF VEEEEDDDPL 120 GVKRFQRPND DEAMVLPSSS RGGLLEDVVP LVVRNPTAVG ESPSSCVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-16	44	105	13	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008448088.1	1e-35	PREDICTED: probable WRKY transcription factor 49
Swissprot	Q9FHR7	7e-27	WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBL	S8C094	1e-121	S8C094_9LAMI; Uncharacterized protein
STRING	XP_008448088.1	5e-35	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12075	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	3e-29	WRKY DNA-binding protein 49

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]