PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59635.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family G2-like
Protein Properties Length: 145aa    MW: 16119.4 Da    PI: 8.6895
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59635.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.85.1e-332276155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprlrWt +LHerFv+av+qLGG+ kAtPk+il++m+vkgLtl h+kSHLQkYRl
  EPS59635.1 22 KPRLRWTADLHERFVDAVTQLGGATKATPKAILRTMGVKGLTLFHLKSHLQKYRL 76
                79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.5791979IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-321977IPR009057Homeodomain-like
SuperFamilySSF466896.63E-172278IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-242277IPR006447Myb domain, plants
PfamPF002492.7E-82475IPR001005SANT/Myb domain
PfamPF143799.3E-8117138IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
PAYGQRLPCG EPCMVQLTSD PKPRLRWTAD LHERFVDAVT QLGGATKATP KAILRTMGVK  60
GLTLFHLKSH LQKYRLGKQS GKELGESSKD GVYAMDSPLS SDSHQNLHSS DMNDGYEVKE  120
ALRAQMEVQS QLHLQVEVSP LYNKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-202278157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-202278157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-202278157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-202278157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086304.12e-72protein PHR1-LIKE 2-like
SwissprotQ94A573e-54PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLS8BYF11e-104S8BYF1_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M01478.1.p9e-72(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97642027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-56G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]