PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59366.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

WRKY

Protein Properties

Length: 301aa MW: 32747.5 Da PI: 10.3929

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59366.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.4	9.2e-31	230	287	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+++d v+++tYegeHnh EPS59366.1 230 DDYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERASDDLAVLVVTYEGEHNHA 287 99*********************9988**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.7E-16	189	226	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.3E-32	216	289	IPR003657	WRKY domain
PROSITE profile	PS50811	31.858	223	289	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-26	225	289	IPR003657	WRKY domain
SMART	SM00774	5.1E-36	228	288	IPR003657	WRKY domain
Pfam	PF03106	3.0E-26	230	286	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MAVDFVSEYN IASKIAESAA REAAAAGLQS LQKLVALFSH PQNLSSPIPS GGDYMAVADI 60 AVSKFKRFIS LIDPSPRTGH ARFRRGPGLQ NAEIAGTSIC PPEVNQPPPR RITQIQRLPP 120 VPLPQLHGQI ERKDPSTVTL NFASPATPYL LSLTGETQPS MSSGFQITNF SHSSSAGRLP 180 ISKSSSLKRK CHSMDDGGGK CHCPKKRKSR LKRVVRVPAI SLKMADIPPD DYSWRKYGQK 240 PIKGSPHPRG YYKCSSIRGC PARKHVERAS DDLAVLVVTY EGEHNHAIPK NQSPPSVLES 300 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-23	216	289	2	74	WRKY transcription factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	207	KRKCHSMDDGGGKCHCPKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00450	DAP	Transfer from AT4G24240	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074403.1	1e-125	probable WRKY transcription factor 7
Swissprot	Q9STX0	2e-71	WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBL	S8C4S0	0.0	S8C4S0_9LAMI; Uncharacterized protein
STRING	XP_009604893.1	1e-112	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1220	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	2e-58	WRKY DNA-binding protein 15

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]