PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59220.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WRKY
Protein Properties Length: 175aa    MW: 20298.7 Da    PI: 9.4406
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59220.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.6e-321773259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                dDgynWrKYGqK+v+gsefprsYY+Ct+++Cpvkk vers  +++++ei+Y+++Hnh+
  EPS59220.1 17 DDGYNWRKYGQKQVRGSEFPRSYYKCTHSDCPVKKIVERSL-EGHITEIIYKSRHNHS 73
                8****************************************.***************7 PP
2WRKY36.21.2e-11154175122
                 ---SS-EEEEEEE--TT-SS-E CS
        WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                 ldDgy+WrKYGqK+vkg+++pr
  EPS59220.1 154 LDDGYKWRKYGQKVVKGNPHPR 175
                 59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.6071175IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-281175IPR003657WRKY domain
SuperFamilySSF1182901.96E-251475IPR003657WRKY domain
SMARTSM007741.0E-331674IPR003657WRKY domain
PfamPF031061.5E-241772IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-13140175IPR003657WRKY domain
SuperFamilySSF1182904.58E-10146175IPR003657WRKY domain
PROSITE profilePS5081115.824149175IPR003657WRKY domain
PfamPF031061.7E-7155175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
SDYKPHSLNF SVDKPADDGY NWRKYGQKQV RGSEFPRSYY KCTHSDCPVK KIVERSLEGH  60
ITEIIYKSRH NHSAPSKPTR DSELVGFEQH KQNGSFLVLS HGFSDDTKAA MDIRDQYEPE  120
FKKRSLLEAG RNVDSRTLVE PRVIVQTMSE IELLDDGYKW RKYGQKVVKG NPHPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-1616751474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910326.12e-59probable WRKY transcription factor 4
SwissprotQ9XI909e-55WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLS8BX631e-128S8BX63_9LAMI; Uncharacterized protein (Fragment)
STRINGevm.model.supercontig_1.767e-59(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.23e-57WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]