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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS59020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | GATA | ||||||||
Protein Properties | Length: 87aa MW: 9676.44 Da PI: 11.1178 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.8 | 2.9e-18 | 4 | 38 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+tt TplWR gp g+k+LCnaCG++y kk++ EPS59020.1 4 CSDCRTTRTPLWRGGPAGPKSLCNACGIKYNKKRR 38 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.4 | 1 | 33 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.1E-8 | 2 | 55 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-15 | 3 | 38 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.86E-10 | 3 | 39 | No hit | No description |
SuperFamily | SSF57716 | 1.81E-12 | 3 | 38 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 4 | 29 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.7E-16 | 4 | 38 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
LKSCSDCRTT RTPLWRGGPA GPKSLCNACG IKYNKKRRQL LGLETARTAR KKKRNAISGG 60 RYSKLLEKPR EEERAALLLM ALSCSLV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 53 | KRRQLLGLETARTARKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079598.1 | 1e-37 | GATA transcription factor 15 | ||||
Swissprot | Q8LG10 | 1e-18 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | S8BWN9 | 3e-54 | S8BWN9_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.D00108.1.p | 8e-36 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8503 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 2e-19 | GATA transcription factor 23 |
Publications ? help Back to Top | |||
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