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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS58348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 10734.9 Da PI: 9.3986 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.6 | 1.6e-09 | 6 | 52 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+ + + da + + + +W ar +g g++ +++k ++qk+ EPS58348.1 6 TWTAKQNKAFEDALATYDRDtpdRWQNLARAVG-GKSVEDVKRHYQKL 52 7*****************99*************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.237 | 1 | 53 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.9E-7 | 3 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-6 | 6 | 53 | No hit | No description |
Pfam | PF00249 | 2.4E-6 | 6 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-5 | 6 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.71E-12 | 7 | 60 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MNSSSTWTAK QNKAFEDALA TYDRDTPDRW QNLARAVGGK SVEDVKRHYQ KLVQDINHIE 60 SGKVPVPNYR DTNNGYSKMA EAQEQRMTYL KLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-31 | 3 | 93 | 7 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027089785.1 | 6e-43 | protein RADIALIS-like 3 | ||||
Refseq | XP_027092702.1 | 6e-43 | protein RADIALIS-like 3 | ||||
Refseq | XP_027149598.1 | 6e-43 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 8e-36 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | S8D6U5 | 7e-64 | S8D6U5_9LAMI; Uncharacterized protein | ||||
STRING | XP_008220806.1 | 8e-39 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 3e-38 | RAD-like 1 |
Publications ? help Back to Top | |||
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