PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EPS58107.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 331aa MW: 37582.8 Da PI: 9.7881

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS58107.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	99	122	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg++F++++ + H + H EPS58107.1 99 YSCGVCGRRFRSNDKMIDHFKQiH 122 99****************988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.635	99	127	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.007	99	122	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.3E-4	99	123	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	101	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MIESRSCSYS SYLLLLFIGS FGRNSKSRSF SSVNNVAVFW DLNNKPPNSV PPFHAAIRLK 60 KLAQSFGFVK HMIAYANSRP QSKAKKLESC RYIEPKEAYS CGVCGRRFRS NDKMIDHFKQ 120 IHEREHSKRT KQIESARGSR RVDLVGKYAF KMEKYKNAAR DISIPRPLLG YASEDEVRRA 180 GFLVRPDDDS ALWRHVRNMM ERRMIECFII IAAASSHDAA ADDCVGILRE AKGRRLKTVV 240 VGDSDCAGLK RAADARFSWR EVVIGKAGKE AVSVLSRWKD QSVLKGLEWS YDRREIDLDV 300 EPDFFSGEKK GGGGDDDDDG PWWKLEPGMV E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440402.1	2e-97	uncharacterized protein LOC18046927
TrEMBL	S8DFD9	0.0	S8DFD9_9LAMI; Uncharacterized protein
STRING	XP_006440402.1	9e-97	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12125	19	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	7e-80	C2H2 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]