PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EPS57796.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C3H

Protein Properties

Length: 368aa MW: 40197.3 Da PI: 8.359

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS57796.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.2e-06	133	153	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck+Gd C ++Hg EPS57796.1 133 ACPEFRK-GACKRGDACEYSHG 153 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.8E-5	128	154	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.878	129	155	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-5	133	153	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	16	163	186	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.155	163	187	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006979	Biological Process	response to oxidative stress
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
KVMMAGNRPR SNPTVQIPGW DHRYAEDPTV HIQSPISHGL SAGGSPDGPH FEQALAALQR 60 FLPSNSDDAF VAEGEDFDVP VDAFSCDNFR MFEFKVKKCA LARSHDWTAC PFAHPGEKAR 120 RRDPRKCHYS GTACPEFRKG ACKRGDACEY SHGVFECWLH PARYRTQPCK DGTHCRRRVC 180 FFAHTPEQLR VLPYSSAASP EASPGRFVQD SNTFFSAGPF GTSPTSALYS PPPSPPTSGS 240 PPVSPSGSMT LSQLASSMRS LHINKMKLNL GLSGSPPSWG LGVGSPPTVR PGFISLPSTP 300 IPAGKTPRGL AWGPPYEEEP EVERVESGKE LRERIYAKLG KENSLHRVGR VDPSVNLVQD 360 FGWVGELV

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

KVMMAGNRPR SNPTVQIPGW DHRYAEDPTV HIQSPISHGL SAGGSPDGPH FEQALAALQR  60
FLPSNSDDAF VAEGEDFDVP VDAFSCDNFR MFEFKVKKCA LARSHDWTAC PFAHPGEKAR  120
RRDPRKCHYS GTACPEFRKG ACKRGDACEY SHGVFECWLH PARYRTQPCK DGTHCRRRVC  180
FFAHTPEQLR VLPYSSAASP EASPGRFVQD SNTFFSAGPF GTSPTSALYS PPPSPPTSGS  240
PPVSPSGSMT LSQLASSMRS LHINKMKLNL GLSGSPPSWG LGVGSPPTVR PGFISLPSTP  300
IPAGKTPRGL AWGPPYEEEP EVERVESGKE LRERIYAKLG KENSLHRVGR VDPSVNLVQD  360
FGWVGELV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094664.1	1e-177	zinc finger CCCH domain-containing protein 20-like
Swissprot	O82199	2e-98	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
Swissprot	Q9M0G2	2e-98	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	S8C014	0.0	S8C014_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.A00165.1.p	1e-158	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	2e-87	C3H family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]