PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS57474.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 251aa MW: 27283.2 Da PI: 8.9332

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS57474.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss EPS57474.1 37 KEHALNCPRCTSTNTKFCYYNNYSLSQPRYFCKNCRRYWTEGGSLRNVPVGGGSRKNKRSS 97 57889*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	30	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.171	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDGGDGIGVG GGGLIRPHHS SSASTTRVLE KKPRPSKEHA LNCPRCTSTN TKFCYYNNYS 60 LSQPRYFCKN CRRYWTEGGS LRNVPVGGGS RKNKRSSFSS SAAVKKIASP DVDFRNQNPK 120 IHHGHDLNLA YDPPPPFNGI SEFHHVNFPL FGGSFQAKNL NPKDPIASST TPSHLHDLGV 180 SFTLDNSSAS SLGFSLDGIS NQSMYGGDVQ IQQRAFFPFE EMKGNEFGGD NKVQDDGNGG 240 YWSGMLAGGS W

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027338695.1	4e-64	dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	2e-41	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	S8BSV5	0.0	S8BSV5_9LAMI; F-box family protein
STRING	XP_007136465.1	6e-61	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	1e-35	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]