PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS57419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | Dof | ||||||||
Protein Properties | Length: 70aa MW: 8022.74 Da PI: 4.5882 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 43.7 | 5.8e-14 | 45 | 70 | 2 | 27 |
zf-Dof 2 kekalkcprCdstntkfCyynnysls 27 ++k+l+cprCdst+tkfCyynny+++ EPS57419.1 45 PDKILRCPRCDSTDTKFCYYNNYNIN 70 7899********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-8 | 42 | 70 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.9E-10 | 47 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
ELNRSSITEA EEPQNDNKAP ESSDCDETSK GRDSTNGEKK LLMKPDKILR CPRCDSTDTK 60 FCYYNNYNIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087240.1 | 3e-14 | cyclic dof factor 1 | ||||
Swissprot | Q9LQX4 | 4e-11 | DOF13_ARATH; Dof zinc finger protein DOF1.3 | ||||
TrEMBL | S8BSR7 | 2e-43 | S8BSR7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | AC155434.2_FGP006 | 2e-13 | (Zea mays) | ||||
STRING | GRMZM6G787651_P01 | 2e-13 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26790.1 | 2e-13 | Dof family protein |
Publications ? help Back to Top | |||
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