![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT33784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 622aa MW: 67815.3 Da PI: 6.9729 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.5e-20 | 17 | 72 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k EMT33784 17 KKRYHRHTPRQIQQLEAMFKECPHPDENQRLHLSRELGLEPRQIKFWFQNRRTQMK 72 678899***********************************************998 PP | |||||||
2 | START | 162.4 | 3.4e-51 | 147 | 371 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 +a +a++e++++a+a+e +Wvk + e +n d++ ++f++ ++ ++e +r+s +v + lv ++d++ +W+e ++ +a t++v+ +g EMT33784 147 MATRAMDEFIRLAQAGEHLWVKAAggrEVLNVDTYDSIFAKPGSssfrgpdVHVEGSRDSCLVLTSAIALVDMFMDSS-KWTEFFPtivtRARTIDVLVNG 246 5789***********************99999999999987766899*******************************.********************** PP .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHH CS START 89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllr 182 + l+lm+ el ++sp+vp R+f f+Ry+rq ++g w+i+dvSvd +++ ++ +R+++lpSg+li ++sng+skvtwveh++ ++++p +l+r EMT33784 247 magrsESLVLMYEELHVMSPVVPtREFCFLRYCRQIEQGLWAIADVSVDLQRDARYGAPPARSRRLPSGCLIADMSNGYSKVTWVEHMETEDKTPiNQLYR 347 *****************************************************988********************************************* PP HHHHHHHHHHHHHHHHHTXXXXXX CS START 183 slvksglaegaktwvatlqrqcek 206 lv sg+a+ga +w+a+lqr ce+ EMT33784 348 DLVLSGAAFGAHRWLAALQRACER 371 **********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.03E-19 | 7 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-21 | 12 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 15 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.52E-19 | 16 | 72 | No hit | No description |
Pfam | PF00046 | 6.6E-18 | 17 | 72 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 47.661 | 137 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.33E-33 | 138 | 372 | No hit | No description |
CDD | cd08875 | 3.88E-107 | 141 | 370 | No hit | No description |
SMART | SM00234 | 2.2E-41 | 146 | 371 | IPR002913 | START domain |
Pfam | PF01852 | 1.9E-43 | 147 | 371 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.4E-5 | 251 | 337 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.18E-17 | 389 | 613 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 622 aa Download sequence Send to blast |
MDFGDDLVPG SEAHRRKKRY HRHTPRQIQQ LEAMFKECPH PDENQRLHLS RELGLEPRQI 60 KFWFQNRRTQ MKLDRVSSLT SKYLGRPITQ LPSMQPLSMS SLELSVGGLG SPVALGPALD 120 LDPLGGSSPF QLPAPVSEME RPMMAEMATR AMDEFIRLAQ AGEHLWVKAA GGREVLNVDT 180 YDSIFAKPGS SSFRGPDVHV EGSRDSCLVL TSAIALVDMF MDSSKWTEFF PTIVTRARTI 240 DVLVNGMAGR SESLVLMYEE LHVMSPVVPT REFCFLRYCR QIEQGLWAIA DVSVDLQRDA 300 RYGAPPARSR RLPSGCLIAD MSNGYSKVTW VEHMETEDKT PINQLYRDLV LSGAAFGAHR 360 WLAALQRACE RHACLVTPPH RDIAGVTLEG KRSMMRLSQR MVGSFCASLS ASQQHRWTTL 420 SGPGAGVDDA AGVRVMVHRS TDPGQPSGVV LSAATSIWLP VSCDRVFAFV SDENTRSQWD 480 VLSHGNPVQE VSRIPNGSHP GNSISLLRGL NASQNSMLIL QESCADASGS LVVYAPIDLP 540 AANVVMSGED PSAIPLLPSG FTILPDGRAS SSTGSVVTVA FQILVSSLPS SRLNAESVAT 600 VNSLIGTTVE QIKAALNCGS SH |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK376654 | 0.0 | AK376654.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3130F06. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186741.1 | 0.0 | homeobox-leucine zipper protein ROC8-like | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | N1R4W9 | 0.0 | N1R4W9_AEGTA; Homeobox-leucine zipper protein ROC8 | ||||
STRING | EMT33784 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17920.1 | 1e-169 | homeodomain GLABROUS 12 |