PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT33773 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 353aa MW: 40026 Da PI: 8.269 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.4 | 1e-30 | 11 | 138 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevlsk.k 96 lppG++F P+++el+v+yL++k++g + +l ++++v i+++ P+++ +++ e +wyfF+kr +kyatg+r+ r+t +g+Wkatg +e+ + + EMT33773 11 LPPGYHFAPSEDELIVHYLRPKLDGLPPHL-PIFNDVtPITDYRPEKITDEFRDfgEGARWYFFTKRTRKYATGSRPDRTTPgKGFWKATGPVREIPIRpG 110 79*************************998.66777768*********85444433667********************77659************98879 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyr 127 g+lvg +tLvfy+g ++ t+W+m ey+ EMT33773 111 GKLVGRARTLVFYTGPDEP---THWTMYEYE 138 999**********766555...9*******7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-37 | 6 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.852 | 11 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-19 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MEGKQRVLLN LPPGYHFAPS EDELIVHYLR PKLDGLPPHL PIFNDVTPIT DYRPEKITDE 60 FRDFGEGARW YFFTKRTRKY ATGSRPDRTT PGKGFWKATG PVREIPIRPG GKLVGRARTL 120 VFYTGPDEPT HWTMYEYENE NRTSEAEAEA NDKNIDKLGE WVLCTIQKSQ RCDVKKKAGG 180 KAKGKAGGRK RKGKAQSGAD LVQIQSAEVP ETAWPEKGDE TYVFDDLEQT GRSRKRPQMQ 240 QHEPPRSETM MVDDYDYNGI QYIWDDEYMP MPPPLEYEVA PPVAGVGYSY NSMMYQPATS 300 YLHAAHYAVE QDGYAGGHLG GLLGTGNIPC NYLAGQCPLP HRAGLSRRRR RNH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-22 | 9 | 170 | 13 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 174 | 191 | KKKAGGKAKGKAGGRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167482.1 | 0.0 | NAC domain-containing protein 67-like | ||||
TrEMBL | N1R4P3 | 0.0 | N1R4P3_AEGTA; Uncharacterized protein | ||||
STRING | EMT33773 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15867 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04070.2 | 7e-25 | NAC domain containing protein 47 |