PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33674 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 36361.9 Da PI: 4.7223 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.1 | 1.9e-24 | 44 | 182 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya...tgkrknr.atksgyWkatgkdk 90 lppG+ F+Pt+ee+v+ yL+ ++g++++ +e v+ e d+y P L + +++ ++ +w+f ++ + ++ g+r r +++ gyWk ++k EMT33674 44 LPPGVYFNPTNEEIVHTYLNGWIAGHDTSGAEaaVVIEDDVYGDRPDVLARrhlsaSTRDSDPNWWFCCHCKVQAMrggAGHRGDRgVATGGYWKLEQTTK 144 79************************9555441157778**********843454333334448877777666555344578999988899********** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 ev ++ +ge++g +++ fy +++ + ekt+W+m+ey+ EMT33674 145 EVRCEaDGEHIGFNRSFGFYVEHEGEKEKTRWLMEEYT 182 **99889999**********9999999**********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.68E-27 | 37 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.977 | 44 | 209 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-15 | 45 | 182 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MTAKKPKKEA RKLTPRSPPT NTTGVEMAPP ARDDYEYLTP TLALPPGVYF NPTNEEIVHT 60 YLNGWIAGHD TSGAEAAVVI EDDVYGDRPD VLARRHLSAS TRDSDPNWWF CCHCKVQAMR 120 GGAGHRGDRG VATGGYWKLE QTTKEVRCEA DGEHIGFNRS FGFYVEHEGE KEKTRWLMEE 180 YTNVDHPDES TARNDGRNVL PALYRIYRPE DQWQRCWGRA RRRVRGAGQE EPQGGFEAPP 240 PPPSSVFSEY RGDEAASSDD DHGMTTNESL LEETQGSTGG DDCPELRVLV TMNDHGMPAW 300 EMGMGGGYVF ADTSWIDEHY QNTE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-13 | 42 | 215 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-13 | 42 | 215 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-13 | 42 | 215 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-13 | 42 | 215 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-13 | 42 | 215 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-13 | 42 | 215 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-13 | 42 | 215 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-13 | 42 | 215 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-13 | 42 | 215 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-13 | 42 | 215 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-13 | 42 | 215 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-13 | 42 | 215 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-13 | 42 | 215 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-13 | 42 | 215 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161467.1 | 0.0 | NAC domain-containing protein 48-like | ||||
TrEMBL | N1R4U2 | 0.0 | N1R4U2_AEGTA; NAC domain-containing protein 55 | ||||
STRING | EMT33674 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13570 | 17 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 1e-14 | NAC domain containing protein 3 |