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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 36728.3 Da PI: 7.5552 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 30.5 | 1e-09 | 35 | 68 | 97 | 128 |
NAM 97 gelvglkktLvfy..kgrapkgektdWvmheyrl 128 + g+kk+Lv+y g+++k+ekt+Wvmh+y+l EMT33580 35 LMQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 68 4569*********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.825 | 1 | 87 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-4 | 31 | 68 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.18E-11 | 36 | 87 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MASVTPTQRN CQSSNQNRHD YSSGGTHVLT SVAMLMQRGC KKILVLYTNF GKHRKPEKTN 60 WVMHQYHLGE SEEEREGELV VSKIFYQTQP RQCGIGDGAS ASVPSSTGRS AVERRRVGSA 120 GTSPVVRMTP SDMVNAAFQG TTRIQDFSFA QFRSTVEEVG MGGSDHQVVQ VRADEGVLHR 180 PAALHHQHHQ HHHQQQHHVV DEHDHRRHHH HYAGLQQEHH RSSTAAFHVS TPTDPIATLI 240 AAPPVHQGSV VLTAPTAEPY GHGAPSYHNQ EDERPHQTRK FDGRSTSGLE EVIMGCTSRR 300 SKGGETSGSK EGTEWQYPSF WPSDNQDHHG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969775 | 5e-45 | EU969775.1 Zea mays clone 335447 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164992.1 | 0.0 | uncharacterized protein LOC109750443 | ||||
TrEMBL | N1R5Q0 | 0.0 | N1R5Q0_AEGTA; NAC domain-containing protein 8 | ||||
STRING | EMT33580 | 0.0 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-21 | NAC domain containing protein 75 |